PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.313090.1
Common NameCsa_3G902270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 672aa    MW: 73784.1 Da    PI: 4.8491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.313090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12494539454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Cucsa.313090.1 494 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 539
                     799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-5768248IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39490539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18493564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.91E-15493544No hitNo description
PfamPF000104.4E-10494539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18494560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-17496545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MNLWADENAS MMDVFINTDL SSFWVTPPQS QQLPQPSYST PTDPSKAVGQ TPPPPPPSSM  60
SVFNQETLMQ RLQTLIEGAQ ENWTYAIFWQ SSYDYSGGTV LGWGDGYYKG EEDKGKEKAK  120
SSSSIAEQEH RKKVLRELNS LISGSPTSEA DAVDEVVTDT EWFYLVSMTQ SFISGVGLPG  180
QAFFDSNPIW VAGSDRLASS FCERARQGQV FGLQTMVCIP SANGVVELGS SDLILQSSDL  240
MNKVRVLFNF NNLEVETWPI SGVDQGENDP SSLWISEPSS NAIEIANPVP SASAPTPSTT  300
NSQPISKITT ETIENPNKSS VVVETPSSSV PPPSQKTHRQ SQPTQTQSFF TNRELNFSEF  360
GYENGRLKEG NSTSLKPESG EILNFGESKR SSSYPNTDNN LPSGNSLFGG DENKKKRSPT  420
SRGSNEEGML SFTSVVILPS SGGVKSGVCA GDSDHSDLEA SVIREAESSR VVEPEKRPRK  480
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLG DAISYINELR  540
GKLQTAESDK EDLQKQLDSV KKMMISNQPP PDQDIKSSNI NHNDIETDID VKIISWDAMI  600
RIQSSKKNHP AARLMAALEE LDLDINHASI SVVNDLMIQQ ATVKMGSRLY TQEQLRIALL  660
SKIGAIGTNT R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-75632514195Transcription factor MYC3
4rqw_B1e-75632514195Transcription factor MYC3
4rs9_A1e-75632514195Transcription factor MYC3
4yz6_A1e-75632514195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475483KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652651.10.0PREDICTED: transcription factor MYC2
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0A0LH830.0A0A0A0LH83_CUCSA; Transcription factor AtMYC2
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]